Our blogs and videos choice: dna sequencing software

Artificial Life Created in a Laboratory for the First Time ...

They manufactured a new chromosome from artificial DNA in a test tube, then transferred it into an empty cell and watched it multiply – the very definition of being alive. The man-made single cell “creature”, which is a modified version of one of the simplest bacteria on earth, proves that the technology works. Now Dr Venter believes organism, nicknamed Synthia, will pave the way for more complex creatures that can transform environmental waste into clean fuel, vaccinate against disease and soak up pollution. But his development has also triggered debate over the ethics of “playing [more...]

Date: 2010-05-21 13:46:05

Blog posts (36) | Videos (11)

DNA BASER Sequence Assembler 2.91 Free Trial - Visit us for ...

Visit us for updated info: http://www.DNABaser.com DNA Baser Assembler is easy to use software for simple and batch DNA sequence assembly, DNA sequence analysis, contig editing, metadata integration and mutation detection. It also offers a powerful chromatogram viewer/editor. The truly user-friendly interface makes DNA Baser the best choice for DNA contig assembly. For more details, see the DNA BASER Features page. Why is DNA Baser Assembler special? Any software company pretends that their product is the best. But let's see for real if DNA Baser can offer you a better proposition. As you [more...]

Date: 2010-08-31 08:37:00

C'mon, Forbes Wasn't Entirely Wrong About Monsanto - Matthew ...

Even the StarLink fiasco a decade ago, when an Aventis CropScience gene only approved for animal use got into Taco Bell taco shells that were sold in stores didn’t result in harm to people. There was some worry about butterfly populations being harmed, but that didn’t pan out. And there are cases where genetic modification of crops had big benefits. For instance, in preserving papaya crops.Much of the Hawaiian papaya crop is genetically modified to protect against a viral blight that almost wiped out crops a decade ago. (It’s not a Monsanto trait, but it is an example of the way this [more...]

Date: 2010-10-13 16:30:12

E. Coli Plasmid Vectors: Methods and Applications (Methods in ...

E. Coli Plasmid Vectors: Methods and Applications (Methods in Molecular Biology) E. Coli Plasmid Vectors: Methods and Applications (Methods in Molecular Biology) (archive) E. Coli Plasmid Vectors: Methods and Applications (Methods in Molecular Biology (Clifton, N.J.), V. 235.) Table of Contents The Function and Organization of Plasmids Finbarr Hayes Choosing a Cloning Vector Andrew Preston Escherichia coli Host Strains Nicola Casali Chemical Transformation of E. coli W. Edward Swords Electroporation of E. coli Claire A. Woodall DNA Transfer by Bacterial Conjugation [more...]

Date: 2004-04-04 08:00:00

Popular Mechanics Posts 2010 BREAKTHROUGH Awards — The Gadgeteer

While working at the National Institutes of Health in the early 1990s, Venter developed a way to rapidly discover genes by exploiting snippets of DNA called expressed sequence tags. In 1992, he founded The Institute for Genomic Research, and, three years later, he and a team decoded the first genome of a free-living organism. That led to Venter’s best-known breakthrough, mapping the human genome. Last May, he achieved a defining moment in the history of biology when he inserted digitally created DNA into a living bacterium, forming the first synthetic life. His ultimate goal is to design [more...]

Date: 2010-09-28 20:43:25

DV-Curve: a novel intuitive tool for visualizing and analyzing DNA ...

DV-Curve: a novel intuitive tool for visualizing and analyzing DNA sequences Zhu-Jin Zhang Key Laboratory of Image Processing and Intelligent Control, Department of Control Science and Engineering, Huazhong University of Science and Technology, Wuhan 430074, China Received January 2, 2009. Revision received February 8, 2009. Accepted March 2, 2009. Abstract Motivation: The rapid growth of DNA sequence data creates a need to find graphic tools to study DNA sequence in a perceivable form. A large number of scholars work hard in this field. However, it is difficult to handle the following [more...]

Date: 2009-04-23 07:00:00

DNA Art Blog » Blog Archive » PCR Process

We use primer sets that are optimally designed to span the specific genes you choose to have isolated for your canvas. Our technique focuses on the prevention of pre-PCR mis-priming and primer dimerization. Our primers are designed using software with algorithms that check for the potential of secondary structure formation and annealing of primers to itself or within primer pairs. We use hot start Taq Polymerase is designed to enhance the specificity, sensitivity, and yield of the target DNA sequence. Following PCR amplification and purification of the template DNA, we use restriction [more...]

Date: 2010-10-12 15:19:03

Tech Support Scientist,Bioinformatics (West,Central or Eastern ...

This role will be responsible for troubleshooting PacBio SMRT™ DNA sequencing data employing skills in bioinformatics, data analysis, biological insight and software engineering. • Provide timely technical and application assistance in response to customer inquires. • Resolve bioinformatics issues escalated from Field Applications Specialists or customers. Issues will be received via phone, email, Web and Live Chat. • Contribute to the ongoing development of our product Knowledge Base to capture lessons learned and solutions to cases. • Collaborate with Product Marketing, [more...]

Date: 2010-08-27 16:37:28

Case Analyst (Salt Lake City)

Successful candidate will perform genotyping analysis. Experience using GeneMapper genotyping software a plus. Experience performing DNA extraction, PCR and genotyping for STR analysis and mitochondrial sequencing essential. Other lab duties as directed. Required: • BS in Biochemistry, Molecular Biology, Biology or related field • 1 year experience in laboratory • Knowledge of molecular biology testing, analysis and reporting. • Must be able to use hands, stand for periods of time and lift up to 20 lbs. Preferred: • Computer and Microsoft applications proficiency • 2 years [more...]

Date: 2010-10-01 04:43:12

Geneious 5.1.4 – a sequence analysis software for all molecular ...

Geneious combines all the great tools and DNA sequence analysis of proteins in a revolutionary software solution! Its ease of use, bioinformatics accessible to any biologist. It even works on all major operating systems and is very [more...]

Date: 2010-09-30 11:15:21

DNASTAR Releases Next-Gen RNA-Seq and ChIP-Seq Software - SEQanswers

Currently, DNASTAR produces Lasergene, a sequence analysis software suite; SeqMan NGen for the assembly of second and third generation DNA sequence data; ArrayStar, a microarray gene expression visualization and analysis package; QSeq, an RNA-Seq and ChIP-Seq data alignment and analysis tool integrated with ArrayStar; and GenVision, a data visualization software [more...]

Date: 2010-09-22 20:01:13

Prime Focus DeadLine v4.1 SP1

Job monitoring: Drag and drop jobs from the Monitor UI into Deadline´s job monitoring tool for automatic progress updates. Track the progress of a few specific jobs without having to refresh the Monitor UI. Cost effectiveness: Deadline® is available free-of-charge for start-up render farms of two nodes or less. Affordable pricing is available for small, medium and large render farms. Reduced energy footprint: Deadline® provides a green-friendly solution of reduced energy consumption with Deadline´s  password Management feature that shuts down idle machines saving power and cooling [more...]

Date: 2010-10-13 09:38:14

Software Packages presenti in Ubuntu 10.04 Lucid Lynx Categoria ...

ncbi-epcr (2.3.12-1) : Tool to test a DNA sequence for the presence of sequence tagged sites; ncbi-rrna-data (6.1.20090809-1) : large rRNA BLAST databases distributed with the NCBI toolkit .... poa (2.0+20060928-2) : Partial Order Alignment for multiple sequence alignment; praat (5.1.25-1) : program for speech analysis and synthesis; primer3 (1.1.4-1) : Tool to design flanking oligo nucleotides for DNA amplification [more...]

Date: 2010-09-12 09:46:00

Bioinformatics programmer for Next-Gen DNA Sequencing Core, NYU ...

Location : NYU Langone Medical Center, New York, New York, USA Deadline for applications : August 1, 2010. Description : BACKGROUND: NYU Medical Center operates a core DNA sequencing lab with Illumina and 454 sequencers. The Sequencing Bioinformatics group provides data management with both basic and advanced bioinformatics data analysis. (The search for this position has been re-opened as of July 10, 2010). RESPONSIBILITIES: Manage all aspects of bioinformatics associated with running a 454 Genome Sequencer. Meet with scientists to determine experimental design, set up runs, process [more...]

Date: 2010-07-19 15:44:06

Vision Shopsters:snp Genotyping And Analysis Markets And The ...

Kalorama Information's analyst Justin Saeks has taken a detailed look into the market for DNA Sequencing Equipment, as well as Gene Expression Profiling Systems. Now, in his report SNP Genotyping and Analysis Markets he looks at SNP ... Estimates of Revenues by Region (North America, Europe and ROW) and By Product Type (Consumable, Instruments, Software) * Complete List of SNP-Related Deals Made Between Companies Since 2002 * Exhaustive Review of Products on the Market [more...]

Date: 2010-10-10 13:00:18


Secondary Antibodies Western Kits Software AlignIR e-Seq SagaGT SagaMX Applications Genomics AFLP® DNA Sequencing Ecotilling Education Solutions Microsatellites Reverse Genetics SNP Discovery TILLING Undergraduate Research Proteomics [more...]

Date: 2010-09-26 00:31:50

Have we figured out what is causing honeybee colony collapse ...

But the Army/Montana team, using a new software system developed by the military for analyzing proteins, uncovered a new DNA-based virus, and established a linkage to the fungus, called N. ceranae. The big breakthrough here was identifying the virus using the Army’s new software.  In combination with the fungus, the new virus – dubbed IIV – was able to wipe out bee hives with 100% efficacy.  Scientists are still not completely sure the sequence of events or even why this started happening to American honeybees and not Australian variants, for example.  But this research is a major [more...]

Date: 2010-10-13 18:19:13

NIH launches Genotype-Tissue Expression project | Healthy For Life

The DNA from each donor will be genotyped, a process that catalogs genetic variants across an individual's genome. Then, using 'next-generation sequencing' technologies, the RNA in each individuals tissues will be sequenced using a new technique .... NCBI creates public databases in molecular biology, conducts research in computational biology, develops software tools for analyzing molecular and genomic data, and disseminates biomedical information, all for the better [more...]

Date: 2010-10-11 23:01:05


GENOMIC CHARACTRIZATION OF AEROMONAS HYDROPHILA ISOLATES USING RAPD-PCR TECHNIQUE by Mitali Dhiman and S. S. Mishra Central Inland Fisheries Resear Aeromonas hydrophila are  involved in various disease problems in humans and aquatic  animals and are known to be  phenotypically, serologically and genetically quite diverse. Development and use of a sensitive and specific  diagnostic test is warranted for detection and characterization of this pathogen.In the present study,  Fish  and water samples from river Hooghly were streaked onto Aeromonas selective growth medium (Rimler-shotts [more...]

Date: 2010-10-08 20:08:05

Tessella » Bioinformatics Software Developer

Works with scientists and teams of skilled bioinformaticians to identify business needs and recommends technical solutions Creates and integrates computer algorithms into existing NextGen DNA Sequencing data analysis pipelines Recommends software to analyze and integrate Next Generation sequencing data Integrates community-developed bioinformatics tools into existing data analysis pipelines Ensures issues are identified, tracked, reported on and resolved in a timely manner. Assists in enforcement of project deadlines and schedules Takes input from supervisor and appropriately and accurately [more...]

Date: 2010-08-09 08:00:00

Human DNA : Surprisingly Diverse

Human DNA : Surprisingly Diverse Agençe France-Presse 23 November 2006 Source: www.abc.net.au New investigations into the code for life suggest the assumption that humans are genetically almost identical is wide off the mark, and the implications could be resounding. Current thinking, inspired by the results five years ago from the Human Genome Project, is that the 6 billion humans alive today are 99.9% similar when it comes to genetic content and identity. But research published today in the journal Nature suggests we are genetically more diverse. The repercussions could be far-reaching [more...]

Date: 2010-10-08 11:11:33

Genomics and Gene Sequencing IPOs Booming?

The Company was founded in 2005, has 159 employees, and has a proprietary DNA sequencing platform with integrated software and bioinformatics providing services for genomic based research (see Raygent profile). Applications for the complete genome sequencing services are cancer research, Mendelian Disease research, Rare Variant Disease research, and clinical trial optimization. The Company has raised $95.4M since inception through six VCs and 5% shareholders: Orbimed Advisors, Essex Woodlands Health Ventures, Prospect Venture Partners III, OVP Venture Partners, Enterprise Partners and [more...]

Date: 2010-10-05 04:13:00

Lab Tech / Research Associate (Torrey Mesa) | PCR Jobs

Candidate must be familiar with basic molecular biology techniques such as DNA purification, DNA gel electrophoresis, restriction digestion, PCR including primer design, plasmid construction, DNA sequence analysis software and bacterial transformation. Candidate will also assist with sample receipt and tracking, maintain inventory and equipment, and perform general lab maintenance and cleaning to include handling of biological waste. Education/ Skills/Attributes Required: · Must be a US Citizen. · BS degree in biology/biochemistry with 0-3 years industrial experience. · Experience with [more...]

Date: 2010-10-12 19:15:31

Free molecular biology software for Macs | Bioinformatics Blog

Posted on the October 12th, 2010 under Free mac software by bioinformatics-blog 1. Serial Cloner Serial Cloner is fantastic all-in-one workbench; import and manipulate sequences, construct plasmid and restriction site maps, determine %GC and fragment TM, extract and ligate fragments, perform virtual PCR… and lots more, all in one window using a very intuitive graphical interface. 2. 4Peaks 4Peaks is an extremely user friendly DNA sequence chromatogram viewer and editor from the extremely talented guys at Mekentosj. It’s miles better than any of it’s clunky counterparts… try it, [more...]

Date: 2010-10-12 11:08:47

Evolution News & Views: Guy Walks Into a Bar and Thinks He's a ...

Part of the reason for this is if one decides to take into account the plethora of species-specific DNA insertions and deletions ("indels") that are present along any segment compared between chimp and human, the percentage of identity drops. Another reason is that duplications, inversions, translocations, and transpositions at all scales uniquely characterize the two genome sequences -- these have to be untangled before aligning the sequences in order to measure their similarity. Also, the 99% identity figure is often derived from protein-coding regions that only comprise about 1.5% of the [more...]

Date: 2009-05-14 19:06:54

MEGA: A biologist-centric software for evolutionary analysis of ...

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences Sudhir KumarSudhir Kumar is conducting large-scale analysis of genome sequences and spatial patterns of gene expression, and developing statistical methods and bioinformatics tools. He is the Director of the Center for Evolutionary Functional Genomics at Arizona State University, AZ, USA. , Masatoshi NeiMasatoshi Nei is one of the founders of molecular evolutionary genetics and pursues statistical analysis of molecular and genome evolution. He is the Director of the Institute of Molecular Evolutionary [more...]

Date: 2010-09-02 23:38:15

Senior Software Engineer - SEQanswers

Complete Genomics is an emerging DNA sequencing technology with the promise of high throughput, low cost sequencing of human genomes. The technology has proven itself by sequencing of hundreds of human genomes for customers from research institutions to pharmaceutical giants to clinical researchers. Complete Genomics is aggressively pursuing innovations to aid its customers in the study of human disease and to push its service into vast new markets. It has filed an S1 for IPO. The assembly pipeline team is an amalgam of exceptional bioinformaticians and software engineers of diverse [more...]

Date: 2010-10-01 18:28:02

Bioinformatics and its applications

Shotgun sequence techniques are also used for sequence analysis of numerous fragments of DNA. Special software is used to see the overlapping of fragments and their assembly. Prediction of Protein Structure:- It is easy to determine the primary structure of proteins in the form of amino acids which are present on the DNA molecule but it is difficult to determine the secondary, tertiary or quaternary structures of proteins. For this purpose either the method of crystallography is used or tools of bioinformatics can also be used to determine the complex protein structures. Genome [more...]

Date: 2010-09-24 07:00:00

automated dna sequencing

Fluorescence-based DNA sequencing systems use dideoxy chain  A text file of the inferred DNA sequence is output directly. Automated DNA Sequencing Guidelines: One of the most common problems encountered in automated DNA sequencing  DNA sequences will be available in 2-4 days after they are submitted. Automated DNA Sequencing Request Automated DNA Sequencing Request. Date: Requested By: Principal Investigator: P.O. DNA SEQUENCING. – See website for volume discount on BigDye XTerminator sequencing . Automated DNA Sequencing – Biocompare Automated DNA Sequencing DNA Sequencing | [more...]

Date: 2010-07-09 06:51:50

DNA-Rail, the 2 1 / 2 minute demonstration | DNA Sequencing

DNA-Guide software demonstrates how consumers could be in the management of their genetic information to participate in the market. DNA-Guide offers a solution that uniquely identifies the genetic data set and then make use of geographical information systems (GIS) as a platform for the exchange of personal genetic information and services in all sectors of the economy to create. Possibly Related Posts: 1994 INAC Seaweed collection expedition to the Antarctic Peninsula Epigenetics Webinar (Part 2 of 4) As a sequence of the genome sequencing of 7 Products Sounds Seen # 1 – 1 [more...]

Date: 2010-10-03 11:50:08

Is It Safe To Have Personal DNA Testing? – Science

This may possibly probably weighing straight down criticisms against exclusive DNA testing. In addition, price of screening will be lowered being a end result of competitors that allow it to be more affordable and less expensive software applications prices for public. It higher that individuals succumb for the solitude problems as screening requirements mass submission of DNA examples in to the database. Certainly, problems these kinds of as mass submission of examples could slow straight down the means of investigation of misdemeanors. As all personnel would make faults – we understand in [more...]

Date: 2010-10-04 02:18:56

Microsoft Research Makes Microsoft Biology Foundation and ...

MBF implements a range of parsers for common bioinformatics file formats; a range of algorithms for manipulating DNA, RNA and protein sequences; and a set of connectors to biological Web services such as National Center for Biotechnology Information BLAST.“Biologists face a number of issues today, such as detecting correlations between human genome sequencing or identifying the likelihood for a patient to develop a certain disease,” said Tony Hey, corporate vice president of Microsoft External Research. “The MBF aims to provide healthcare research facilities with the tools needed to [more...]

Date: 2010-10-13 12:28:03

DNAnexus raises $1.55M for DNA sequencing | VentureBeat

DNAnexus, maker of software used to manage data gathered from DNA sequencing processes, has brought in $1.55 million in a first round of funding, according to PE Wire. First Round Capital provided the bulk of the financing for the Palo Alto, Calif.-based company. Next Story: Google’s Schmidt ditches increasingly awkward Apple board seat Previous Story: Google goes after Microsoft Office with word-of-mouth workplace marketing [more...]

Date: 2009-08-03 18:52:13

IDT enters exclusive agreement with 454 Life Sciences to provide ...

IDT enters exclusive agreement with 454 Life Sciences to provide custom primers for GS FLX Titanium Chemistry 4 October 2010 – HPLC purified and MS certified primers for genome sequencing CORALVILLE, IA: Integrated DNA Technologies (IDT), the custom biology company, has signed an exclusive agreement with 454 Life Sciences, a Roche company, to provide researchers with custom primers for the GS FLX Titanium Chemistry, used on the company’s GS FLX System and GS Junior System. Available as FusionPrimers or Rapid Library MID (Molecular Identification) Adaptor Oligos, these products are used [more...]

Date: 2010-10-04 16:16:19

Bioinformatics Programmers Require For Scigenom Labs Pvt Ltd /M.Sc ...

We conduct research work aimed at understanding the role of DNA sequence variation in human health and disease. Our state of the art DNA sequencing laboratory providing Sanger sequencing, analysis and genotyping service to research institutions, investigators and laboratories worldwide. Name of the Position : Bioinformatics Programmers Number of Opening : one Name of the Institute : Scigenom Labs Pvt Ltd Functional Area :Application Programming, Maintenance Experience: 1 - 5 Years Location:Ernakulam / Kochi/ Cochin Desired Candidate Profile : The person in this position should have good [more...]

Date: 2010-08-31 18:47:29

Estrogen-Receptor Polymorphisms and Effects of Estrogen ...

Sequencing products were analyzed on a 3700 DNA Analyzer. DNA sequencing data were aligned and analyzed with the use of DNA-analysis software (Sequencher, Gene Codes, Ann Arbor, Mich.). Details about the sequencing primers and the PCR and ..... Furthermore, their influence on other clinical effects of estrogen, including the relief of perimenopausal symptoms and the effects on the risk of osteoporosis, venous thrombosis, and breast cancer, must also be evaluated before a [more...]

Date: 2002-03-28 05:00:00

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